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Applied Phylogenetics - AP

Applied Phylogenetics - AP

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673 Publications
Castro-Nallar E, Crandall KA, Pérez-Losada M (2012) Genetic diversity and molecular epidemiology of HIV transmission. Future Virology, 7(3): 1-14. doi: 10.2217/FVL.12.4 Open publication
Castro-Nallar E, Perez-Losada M, Burton GF, Crandall KA (2012) The evolution of HIV: Inferences using phylogenetics. Molecular Phylogenetics and Evolution 62: 777-92. doi: 10.1016/j.ympev.2011.11.019 Open publication
Chiari Y*, *van der Meijden A*, Mucedda M, Lourenco JM, Hochkirch A, Veith M (2012) Phylogeography of Sardinian cave salamanders (genus Hydromantes) is mainly determined by geomorphology. PLoS One, 7(3): e32332. doi: 10.1371/journal.pone.0032332 Open publication
Chiari Y, Cahais V, Galtier N, Delsuc F (2012) Phylogenomic analyses support the position of the turtles as the sister group of birds and crocodiles (Archosauria). BMC Biology, 10: 65. doi: 10.1186/1741-7007-10-65 Open publication
Chiari Y, Claude J (2012) Morphometric identification of individuals when there are more shape variables than reference specimens: a case study in Galapagos tortoises. Comptes rendus Biologies, 335(1): 62-68. doi: 10.1016/j.crvi.2011.10.007 Open publication
Crottini A, Brown JL, Mercurio V, Glaw F, Vences M, Andreone F (2012) Phylogeography of the poison frog Mantella viridis (Amphibia: Mantellidae) reveals chromatic and genetic differentiation across ecotones in northern Madagascar. Journal of Zoological Systematics and Evolutionary Research, 50(4): 305-314. doi: 10.1111/j.1439-0469.2012.00665.x Open publication
Crottini A, Madsen O, Poux C, Strauss A, Vieites DR, Vences M (2012) Vertebrate time-tree elucidates the biogeographic pattern of a major biotic change around the K-T boundary in Madagascar. Proceedings of the National Academy of Sciences of the United States of America, 109 (14): 5358-5363. doi: 10.1073/pnas.1112487109 Open publication
Crottini A, Miralles A, Glaw F, Harris DJ, Lima A, Vences M (2012) Description of a new pygmy chameleon (Chamaeleonidae: Brookesia) from central Madagascar. Zootaxa 3490: 63-74.
Faria MA, Harris DJ, Visnevschi-Necrasov T, Tavares de Sousa M, Nunes E (2012) The correct phylogenetic position of Lotus conimbricensis Brot. (Leguminosae, Loteae) based on nuclear ribosomal ITS sequences. Acta Botanica Croatica, 71(1): 87–94,. doi: 10.2478/v10184-011-0055-4 Open publication
Fonseca MM, Rocha S, Posada D (2012) Base-pairing Versatility Determines Wobble Sites in tRNA Anticodons of Vertebrate Mitogenomes. PLoS ONE, 7(5): e36605. doi: 10.1371/journal.pone.0036605 Open publication
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