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Genomics of Evolutionary Change - EVOCHANGE

Publications

65 Publications

Carneiro M, Albert FW, Afonso S, Pereira RJ, Burbano H, Campos R, Melo-Ferreira J, Blanco-Aguiar JA, Villafuerte R, Nachman MW, Good JM, Ferrand N (2014) The Genomic Architecture of Population Divergence between Subspecies of the European Rabbit. PLoS genetics, 10(8): e1003519. doi: 10.1371/journal.pgen.1003519 Open publication

Cheng E, Hodges KE, Melo-Ferreira J, Alves PC, Mills L (2014) Conservation implications of the evolutionary history and genetic diversity hotspots of the snowshoe hare. Molecular Ecology, 23(12): 2929-2942. doi: 10.1111/mec.12790 Open publication

Faria R, Renaut S, Galindo J, Pinho C, Melo-Ferreira J, Melo M, Jones F, Salzburger W, Schluter D, Butlin R (2014) Advances in Ecological Speciation: an integrative approach. Molecular Ecology, 23(3): 513-521. doi: 10.1111/mec.12616 Open publication

Melo-Ferreira J, Farelo L, Freitas H, Suchentrunk F, Boursot P, Alves PC (2014) Home loving boreal hare mitochondria survived several invasions in Iberia: the relative roles of recurrent hybridisation and allele surfing. Heredity. 112(3): 265-273. doi: 10.1038/hdy.2013.102 Open publication

Melo-Ferreira J, Seixas FA, Cheng E, Mills LS, Alves PC (2014) The hidden history of the snowshoe hare, Lepus americanus: extensive mitochondrial DNA introgression inferred from multilocus genetic variation. Molecular Ecology, 23(18); 4617-4630. doi: 10.1111/mec.12886 Open publication

Melo-Ferreira J, Vilela J, Fonseca MM, da Fonseca RR, Boursot P, Alves PC (2014) The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression. Genome Biology and Evolution, 6(4):886-896. doi: 10.1093/gbe/evu059 Open publication

Pinheiro A, Melo-Ferreira J, Abrantes J, Martinelli N, Lavazza A, Alves PC, Gortazar C, Esteves PJ (2014) Sequencing of Sylvilagus VDJ genes reveals a new VHa allelic lineage and shows that ancient VH lineages were retained differently in leporids. Immunogenetics, 66(12): 719-726. doi: 10.1007/s00251-014-0807-0 Open publication

Seixas FA, Juste J, Campos PF, Carneiro M, Ferrand N, Alves PC, Melo-Ferreira J (2014) Colonization history of Mallorca Island by the European rabbit, Oryctolagus cuniculus, and the Iberian hare, Lepus granatensis (Lagomorpha: Leporidae). Biological Journal of the Linnean Society, 111: 748-760. doi: 10.1111/bij.12248 Open publication

Gayral P*, Melo-Ferreira J*, Glémin S, Bierne N, Carneiro M, Nabholz B, Lourenco J, Alves PC, Ballenghien M, Faivre N, Belkhir K, Cahais V, Loire E, Bernard A, Galtier N (2013) Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap. PLoS Genetics, 9(4): e1003457. doi: 10.1371/journal.pgen.1003457 Open publication

Korrodi-Gregório L, Abrantes J, Muller T, Melo-Ferreira J, Marcus K, da Cruz e Silva OAB, Fardilha M, Esteves PJ (2013) Not so pseudo: the evolutionary history of Protein Phosphatase 1 Regulatory Subunit 2 and related pseudogenes. BMC Evolutionary Biology, 13: 242. doi: 10.1186/1471-2148-13-242 Open publication

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