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Genomics of Evolutionary Change - EVOCHANGE

Genomics of Evolutionary Change - EVOCHANGE

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65 Publications
Acevedo P, Jiménez-Valverde A, Melo-Ferreira J, Real R, Alves PC (2012) Parapatric species and the implications for climate change studies: a case study on hares in Europe. Global Change Biology, 18: 1509-1519. doi: 10.1111/j.1365-2486.2012.02655.x Open publication
Acevedo P, Melo-Ferreira J, Real R, Alves PC (2012) Past, Present and Future Distributions of an Iberian Endemic, Lepus granatensis: Ecological and Evolutionary Clues from Species Distribution Models. PLoS One, 7(12): e51529. doi: 10.1371/journal.pone.0051529 Open publication
Cahais V, Gayral P, Tsagkogeorga G, Melo-Ferreira J, Ballenghien M, Weinert L, Chiari Y, et al. (2012) Reference-free transcriptome assembly in non-model animals from next generation sequencing data. Molecular Ecology Resources, 12(5): 834-845. doi: 10.1111/j.1755-0998.2012.03148.x Open publication
Carneiro M, Albert FW, Melo-Ferreira J, Galtier N, Gayral P, Blanco-Aguiar JA, Villafuerte R, Nachman MW, Ferrand N (2012) Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome. Molecular Biology and Evolution, 29(7): 1837-1849. doi: 10.1093/molbev/mss025 Open publication
Melo-Ferreira J, Boursot P, Carneiro M, Esteves PJ, Farelo L, Alves PC (2012) Recurrent Introgression of Mitochondrial DNA Among Hares (Lepus spp.) revealed by Species-tree Inference and Coalescent Simulations. Systematic Biology, 61(3): 367-381. doi: 10.1093/sysbio/syr114 Open publication
Paupério J, Herman JS, Melo-Ferreira J, Jaarola M, Alves PC, Searle JB (2012) Cryptic speciation in the field vole: A multilocus approach confirms three highly divergent lineages in Eurasia. Molecular Ecology, 21(24): 6015-6032. doi: 10.1111/mec.12024 Open publication
Boratynski Z, Alves PC, Berto S, Koskela E, Mappes T, Melo-Ferreira J (2011) Introgression of mitochondrial DNA among Myodes voles: consequences for energetics? BMC Evolutionary Biology, 11: 355. doi: 10.1186/1471-2148-11-355 Open publication
Melo-Ferreira J, Alves PC, Rocha J, Ferrand N, Boursot P (2011) Interspecific X-chromosome and mitochondrial DNA introgression in the Iberian hare: selection or allele surfing? Evolution, 65(7): 1956-1968. doi: 10.1111/j.1558-5646.2011.01261.x Open publication
Pietri C, Alves PC, Melo-Ferreira J (2011) Hares in Corsica: high prevalence of Lepus corsicanus and hybridization with introduced L. europaeus and L. granatensis. European Journal of Wildlife Research, 57(2): 313-321. doi: 10.1007/s10344-010-0430-9 Open publication
Melo-Ferreira J, Alves PC, Freitas H, Ferrand N, Boursot P (2009) The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes. Molecular Ecology, 18(12): 2643-2658. doi: 10.1111/j.1365-294X.2009.04221.x Open publication
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