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Miguel Jorge Pinto Carneiro

Principal Researcher

Publications

63 Publications

Letko A, Ammann B, Jagannathan V, Henkel J, Leuthard F, Schelling C, Carneiro M, Drögemüller C, Leeb T (2020). A deletion spanning the promoter and first exon of the hair cycle?specific ASIP transcript isoform in black and tan rabbits. Animal genetics, 51(1): 137-140. doi: 10.1111/age.12881 Open publication

Sato DX, Rafati N, Ring H, Younis S, Feng C, Blanco-Aguiar JA, Rubin CJ, Villafuerte R, Hallböök, Carneiro M, Andersson L (2020). Brain Transcriptomics of Wild and Domestic Rabbits Suggests That Changes in Dopamine Signaling and Ciliary Function Contributed to Evolution of Tameness. Genome biology and evolution, 12(10): 1918-1928. doi: 10.1093/gbe/evaa158 Open publication

Alves JM, Carneiro M, Cheng JY, Matos AL, Rahman MM, Loog L, Campos PF, Wales N, Eriksson A, Manica A, Strive T, Graham SC, Afonso A, Bell DJ, Belmont L, Day JP, Fuller SJ, Marchandeau S, Palmer WJ, Queney G, Surridge AK, Vieira FG, McFadden G, Nielsen R, Gilbert MTP, Esteves PJ, Ferrand N, Jiggins FM (2019). Parallel adaptation of rabbit populations to myxoma virus. Science, 363(6433), 1319-1326. doi: 10.1126/science.aau7285 Open publication

Andrade, P, Pinho, C, Perez i de Lanuza, G, Afonso, S, Brejcha, J, Rubin, CJ, Wallerman, O, Pereira, P, Sabatino, SJ, Bellati, A, Pellitteri-Rosa, D, Bosakova, Z, Bunikis, I, Carretero, MA, Feiner, N, Marsik, P, Pauperio, F, Salvi, D, Soler, L, While, GM , Uller, T, Font, E, Andersson, L & Carneiro, M (2019). Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard. Proceedings of the National Academy of Sciences, 116(12), 5633-5642. doi: 10.1073/pnas.1820320116 Open publication

Cardoso-Moreira, M.; Halbert, J.; Valloton, D.; Velten, B.; Chen, C.; Shao, Y.; Liechti, A.; Ascenção, K.; Rummel, C.; Ovchinnikova, S.; Mazin, PV.; Xenarios, I.; Harshman, K.; Mort, M.; Cooper, DN.; Sandi, C.; Soares, MJ.; Ferreira, PG.; Afonso, S.; Carneiro, M.; Turner, JMA.; VandeBerg, JL.; Fallahshahroudi, A.; Jensen, P.; Behr, R.; Lisgo, S.; Lindsay, S.; Khaitovich, P.; Huber, W.; Baker, J.; Anders, S.; Zhang, YE.; Kaessmann, H. (2019). Gene expression across mammalian organ development. Nature 571, 505-509. doi: 10.1038/s41586-019-1338-5 Open publication

Koepfli KP;Tamazian G; Wildt D; Dobrynin P; Kim C; Frandsen PB; Godinho R;Yurchenko AA; Komissarov A; Krasheninnikova K; Kliver S; Kolchanova S; Gonçalves M; Carneiro M; Pinto PV; Ferrand N; Maldonado JE; Ferrie GM; Chemnick L; Ryder OA; Johnson WE; Comizzoli P; O'Brien SJ; Pukazhenthi BS (2019). Whole genome sequencing and re-sequencing of the sable antelope (Hippotragus niger): a resource for monitoring diversity in ex situ and in situ populations. G3: Genes, Genomes, Genetics 9, 1785-1793. doi: 10.1534/g3.119.400084 Open publication

Marchandeau, S, Queney, G, Alves, JM, Carneiro, M, & Ferrand, N (2019). Myxomatosis: rabbits have separately developed the same mechanisms of genetic resistance in France, Australia and the United Kingdom. Medecine sciences 2019: M/S, 35(8-9), 611. doi: 10.1051/medsci/2019118 Open publication

Pina-Cabral, LB; Carneiro, M; Criado, B; Esteves, PJ (2019). Maximum likelihood approach suggests positive selection in platelet integrin ?IIb?3 in mammalian species. Platelets 30:4, 460-466. doi: 10.1080/09537104.2018.1457783 Open publication

Gazda MA, Andrade P, Afonso S, Dilytė J, Archer J, Lopes RJ, Faria R, Carneiro M (2018) Signatures of Selection on Standing Genetic Variation Underlie Athletic and Navigational Performance in Racing Pigeons. Molecular Biology and Evolution, 35(5):1176–1189 doi: 10.1093/molbev/msy030 Open publication

Makino T, Rubin CJ, Carneiro M, Axelsson E, Andersson L, Webster MT (2018) Elevated Proportions of Deleterious Genetic Variation in Domestic Animals and Plants. GGenome Biology and Evolution, 10(1): 276-290. doi: 10.1093/gbe/evy004 Open publication

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