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Miguel Jorge Pinto Carneiro

Principal Researcher

Publications

63 Publications

Nowick K, Carneiro M, Faria R (2013) A prominent role of KRAB-ZNF transcription factors in mammalian speciation? Trends in Genetics, 29(3): 130-139. doi: 10.1016/j.tig.2012.11.007 Open publication

Seixas F, Juste J, Campos PF, Carneiro M, Ferrand N, Alves PC, Melo-Ferreira J (2014) Colonization history of Majorca Island by the European rabbit (Oryctolagus cuniculus) and the Iberian hare (Lepus granatensis) inferred from molecular variation. Biological Journal of the Linnean Society, 111(4): 748-760. doi: 10.1111/bij.12248 Open publication

Sousa VMC, Carneiro M, Ferrand N, Hey J (2013) Identifying Loci Under Selection Against Gene Flow in Isolation with Migration Models. Genetics, 194(1): 211-233. doi: 10.1534/genetics.113.149211 Open publication

Albert FW, Somel M, Carneiro M, Aximu-Petri A, Halbwax M, Thalmann O, Blanco-Aguiar JA, Plyusnina IZ, Trut L, Villafuerte R, Ferrand N, Kaiser S, Jensen P, Paabo S (2012) A comparison of brain gene expression levels in domesticated and wild animals. PLoS Genetics, 8 (9): e1002962. doi: 10.1371/journal.pgen.1002962 Open publication

Carneiro M, Albert FW, Melo-Ferreira J, Galtier N, Gayral P, Blanco-Aguiar JA, Villafuerte R, Nachman MW, Ferrand N (2012) Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome. Molecular Biology and Evolution, 29(7): 1837-1849. doi: 10.1093/molbev/mss025 Open publication

Melo-Ferreira J, Boursot P, Carneiro M, Esteves PJ, Farelo L, Alves PC (2012) Recurrent Introgression of Mitochondrial DNA Among Hares (Lepus spp.) revealed by Species-tree Inference and Coalescent Simulations. Systematic Biology, 61(3): 367-381. doi: 10.1093/sysbio/syr114 Open publication

Carneiro M, Afonso S, Geraldes A, Garreau H, Bolet G, Boucher S, Tircazes A, Queney G, Nachman MW, Ferrand N (2011) The genetic structure of domestic rabbits. Molecular Biology and Evolution, 28(6): 1801-1816. doi: 10.1093/molbev/msr003 Open publication

Carneiro M, Blanco-Aguiar JA, Villafuerte R, Ferrand N, Nachman MW (2010) Speciation in the European rabbit (Oryctolagus cuniculus): islands of differentiation on the X-chromosome and autosomes. Evolution, 64: 3443-3460. doi: 10.1111/j.1558-5646.2010.01092.x Open publication

Geraldes A, Rambo T, Wing R, Ferrand N, Nachman MW (2010) Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits. Molecular Biology and Evolution, 27(11): 2437-2440. doi: 10.1093/molbev/msq139 Open publication

Carneiro M, Ferrand N, Nachman MW (2009) Recombination and Speciation: Loci near Centromeres Are More Differentiated than Loci Near Telomeres Between Subspecies of the European Rabbit (Oryctolagus cuniculus). Genetics, 181(2): 593-606. doi: 10.1534/genetics.108.09682 Open publication

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