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Miguel Jorge Pinto Carneiro

Principal Researcher

Publications

63 Publications

Arthofer W, Banbury BL, Carneiro M, Cicconardi F, Duda TF, Harris RB, Kang DS, Leache AD, Nolte V, Nourisson C, Palmieri N, Schlick-Steiner BC, Schlotterer C, Sequeira F, Sim C, Steiner FM, Vallinoto M, Weese DA (2015) Genomic Resources Notes Accepted 1 August 2014-30 September 2014. Molecular Ecology Resources, 15(1): 228-229. doi: 10.1111/1755-0998.12340 Open publication

Carneiro M, Piorno V, Carl-Johan R, Alves J, Ferrand N, Alves PC, Anderson L (2015) Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits. Animal Genetics, 46(4): 418–425. doi: 10.1111/age.12299 Open publication

Chavez-Galarza J, Henriques D, Johnston JS, Carneiro M, Rufino J, Patton JC, Pinto MA (2015) Revisiting the Iberian honey bee (Apis mellifera iberiensis) contact zone: maternal and genome-wide nuclear variations provide support for secondary contact from historical refugia. Molecular Ecology, 24(12): 2973-2992. doi: 10.1111/mec.13223 Open publication

Melo-Ferreira J, de Matos AL, Areal H, Lissovsky AA, Carneiro M, Esteves PJ (2015) The phylogeny of pikas (Ochotona) inferred from a multilocus coalescent approach. Molecular Phylogenetics and Evolution, 84: 240-244. doi: 10.1016/j.ympev.2015.01.004 Open publication

Piorno V, Villafuerte R, Branco M, Carneiro M, Ferrand N, Alves PC (2015) Low persistence in nature of captive reared rabbits after restocking operations. European Journal of Wildlife Research, 61(4): 591-599. doi: 10.1007/s10344-015-0934-4 Open publication

Carneiro M, Albert FW, Afonso S, Pereira RJ, Burbano H, Campos R, Melo-Ferreira J, Blanco-Aguiar JA, Villafuerte R, Nachman MW, Good JM, Ferrand N (2014) The Genomic Architecture of Population Divergence between Subspecies of the European Rabbit. PLoS genetics, 10(8): e1003519. doi: 10.1371/journal.pgen.1003519 Open publication

Carneiro M, Rubin CJ, Di Palma F, Albert FW, Alfoldi J, Barrio AM, Pielberg G, Rafati N, Sayyab S, Turner-Maier J, Younis S, Afonso S, Aken B, Alves JM, Barrell D, Bolet G, Boucher S, Burbano HA, Campos R, Chang JL, Duranthon V, Fontanesi L, Garreau H, Heiman D, Johnson J, Mage RG, Peng Z, Queney G, Rogel-Gaillard C, Ruffier M, Searle S, Villafuerte R, Xiong A, Young S, Forsberg-Nilsson K, Good JM, Lander ES, Ferrand N, Lindblad-Toh K, Andersson L (2014) Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication. Science (New York, N. Y. ), 345 (6200): 1074-1079. doi: 10.1126/science.1253714 Open publication

Seixas FA, Juste J, Campos PF, Carneiro M, Ferrand N, Alves PC, Melo-Ferreira J (2014) Colonization history of Mallorca Island by the European rabbit, Oryctolagus cuniculus, and the Iberian hare, Lepus granatensis (Lagomorpha: Leporidae). Biological Journal of the Linnean Society, 111: 748-760. doi: 10.1111/bij.12248 Open publication

Carneiro M, Baird SJE, Afonso S, Ramirez E, Tarroso P, Villafuerte R, Teotónio H, Nachman MW, Ferrand N (2013) Steep clines within a highly permeable genome across a hybrid zone between two subspecies of the European rabbit. Molecular Ecology, 22(9): 2511-2525. doi: 10.1111/mec.12272 Open publication

Gayral P*, Melo-Ferreira J*, Glémin S, Bierne N, Carneiro M, Nabholz B, Lourenco J, Alves PC, Ballenghien M, Faivre N, Belkhir K, Cahais V, Loire E, Bernard A, Galtier N (2013) Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap. PLoS Genetics, 9(4): e1003457. doi: 10.1371/journal.pgen.1003457 Open publication

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